insensa.infoconnections
Class PearsonCorrelation

java.lang.Object
  insensa.connections.AbstractConnection
      insensa.infoconnections.PearsonCorrelation

All Implemented Interfaces:

ConnectionFileChanger, FileObserver, InfoConnection, java.lang.Runnable

public class PearsonCorrelation
extends AbstractConnection
implements InfoConnection

Field Summary

private static java.lang.String	CONSTANT
private int	countCalc
private java.util.List<java.util.List<java.lang.Object>>	coVarList
private int	index
static int	MEAN_INITIATION
private static java.lang.String	meanX
private static java.lang.String	meanY
static int	NODATA_SKIP
private int	option
private static java.lang.String	P_VALUE
private boolean	partial
private static java.lang.String	PARTIAL_COR
private java.util.List<java.util.List<java.lang.Object>>	partialList
private static java.lang.String	stdDevX
private static java.lang.String	stdDevY
private boolean	t_test
private static java.lang.String	T_TEST
static int	ZERO_INITIATION

Fields inherited from class insensa.connections.AbstractConnection

E_OUTPUT_NAME, E_OUTPUT_PATH, fileNameList, id, ID, OUTPUT_NAME, OUTPUT_SET, outputFile, outputFileName, outputFileSet, rasterFileList, separator, used, USED, workerStatus, XML_ELEMENT_FILE

Constructor Summary

PearsonCorrelation()

Method Summary

private java.lang.Float	findCorrelationValue(int index1, int index2)
org.jdom.Element	getConnectionElement() Build a xml Element with the attributes id used fileset name output file name source files full name (absolute) output name output path (relative) .
java.lang.String	getConnectionName()
java.util.List<java.util.List<java.lang.Object>>	getCoVarList() A List of coVar1(String:index1,String:index2,covariance,correlation).
AttributeTable	getData()
java.util.List<java.lang.String>	getInfoDependencies()
int	getOption()
java.lang.String	getOptionName()
boolean	getPartial()
java.util.List<java.util.List<java.lang.Object>>	getPartialList()
boolean	getT_test()
void	setConnectionElement(org.jdom.Element eCon) WARNING: In case that this Connection is unused, you have to set the sourceFileList before invoking this function .
void	setOption(int option)
void	setPartial(boolean partial)
void	setT_test(boolean t_test)
private void	solveDependencies(java.util.List<CRasterFileInformation> files, CRasterFileInformation templateFile)
void	write()
private void	writeFile(CRasterFileInformation fileX, java.util.List<CRasterFileInformation> files)
private void	writeFitFile(CRasterFileInformation fileX, java.util.List<CRasterFileInformation> files)
private void	writePartialCorrelation2()

Methods inherited from class insensa.connections.AbstractConnection

addAttributeValue, addElement, check, getChildElement, getFileNameList, getId, getOutputFile, getOutputFileName, getOutputFileSet, getRasterFileList, getSouceFileRelativePaths, getSourceFileList, getVariableList, isUsed, notifyDelete, run, setId, setOutputFile, setOutputFileName, setOutputFileSet, setSourceFileList, setUsed, setVariableList, setWorkerStatus, solveDependencies, solveDependencies, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Runnable

run

Field Detail

NODATA_SKIP

public static final int NODATA_SKIP

See Also:

Constant Field Values

MEAN_INITIATION

public static final int MEAN_INITIATION

See Also:

Constant Field Values

ZERO_INITIATION

public static final int ZERO_INITIATION

See Also:

Constant Field Values

coVarList

private java.util.List<java.util.List<java.lang.Object>> coVarList

partialList

private java.util.List<java.util.List<java.lang.Object>> partialList

stdDevX

private static final java.lang.String stdDevX

See Also:

Constant Field Values

stdDevY

private static final java.lang.String stdDevY

See Also:

Constant Field Values

meanX

private static final java.lang.String meanX

See Also:

Constant Field Values

meanY

private static final java.lang.String meanY

See Also:

Constant Field Values

PARTIAL_COR

private static final java.lang.String PARTIAL_COR

See Also:

Constant Field Values

CONSTANT

private static final java.lang.String CONSTANT

See Also:

Constant Field Values

T_TEST

private static final java.lang.String T_TEST

See Also:

Constant Field Values

P_VALUE

private static final java.lang.String P_VALUE

See Also:

Constant Field Values

option

private int option

countCalc

private int countCalc

index

private int index

partial

private boolean partial

t_test

private boolean t_test

Constructor Detail

PearsonCorrelation

public PearsonCorrelation()

Method Detail

findCorrelationValue

private java.lang.Float findCorrelationValue(int index1,
                                             int index2)

Parameters:

index1 -

index2 -

Returns:

getConnectionElement

public org.jdom.Element getConnectionElement()

Description copied from class: AbstractConnection

Build a xml Element with the attributes

• id
• used
• fileset name
• output file name
• source files
  • full name (absolute)
  • output name
  • output path (relative)
.

Specified by:

getConnectionElement in interface ConnectionFileChanger

Overrides:

getConnectionElement in class AbstractConnection

Returns:

the newly generated Element

See Also:

AbstractConnection.getConnectionElement()

getConnectionName

public java.lang.String getConnectionName()

Specified by:

getConnectionName in interface ConnectionFileChanger

Returns:

See Also:

ConnectionFileChanger.getConnectionName()

getCoVarList

public java.util.List<java.util.List<java.lang.Object>> getCoVarList()

A List of coVar1(String:index1,String:index2,covariance,correlation).

Returns:

getData

public AttributeTable getData()

Specified by:

getData in interface ConnectionFileChanger

Overrides:

getData in class AbstractConnection

Returns:

See Also:

AbstractConnection.getData()

getInfoDependencies

public java.util.List<java.lang.String> getInfoDependencies()

Specified by:

getInfoDependencies in interface ConnectionFileChanger

Overrides:

getInfoDependencies in class AbstractConnection

Returns:

See Also:

AbstractConnection.getInfoDependencies()

getOption

public int getOption()

Returns:

getOptionName

public java.lang.String getOptionName()

Returns:

getPartial

public boolean getPartial()

Returns:

getPartialList

public java.util.List<java.util.List<java.lang.Object>> getPartialList()

Returns:

getT_test

public boolean getT_test()

Returns:

setConnectionElement

public void setConnectionElement(org.jdom.Element eCon)
                          throws java.io.IOException

Description copied from class: AbstractConnection

WARNING:
In case that this Connection is unused, you have to set the sourceFileList before invoking this function

.

Specified by:

setConnectionElement in interface ConnectionFileChanger

Overrides:

setConnectionElement in class AbstractConnection

Throws:

java.io.IOException

See Also:

AbstractConnection.setConnectionElement(org.jdom.Element)

setOption

public void setOption(int option)

Parameters:

option -

setPartial

public void setPartial(boolean partial)

Parameters:

partial -

setT_test

public void setT_test(boolean t_test)

Parameters:

t_test -

solveDependencies

private void solveDependencies(java.util.List<CRasterFileInformation> files,
                               CRasterFileInformation templateFile)
                        throws java.io.IOException

Parameters:

files -

templateFile -

Throws:

java.io.IOException

write

public void write()
           throws java.io.IOException,
                  org.jdom.JDOMException,
                  CRasterFileException

Specified by:

write in interface ConnectionFileChanger

Throws:

java.io.IOException

org.jdom.JDOMException

CRasterFileException

See Also:

ConnectionFileChanger.write()

writeFile

private void writeFile(CRasterFileInformation fileX,
                       java.util.List<CRasterFileInformation> files)
                throws java.io.IOException

Parameters:

fileX -

files -

Throws:

java.io.IOException

writeFitFile

private void writeFitFile(CRasterFileInformation fileX,
                          java.util.List<CRasterFileInformation> files)
                   throws java.io.IOException

Parameters:

fileX -

files -

Throws:

java.io.IOException

writePartialCorrelation2

private void writePartialCorrelation2()